First off, you may have some misunderstanding regarding the placement of Bloch vectors on the sphere. The placement of a state on the sphere is dictated by the following parametrisation of this state:
$$|\psi\rangle=\cos\theta/2\,|0\rangle+e^{i\phi}\sin\theta/2\,|1\rangle.$$
The parameters ($\theta, \phi$) are then taken as the tangential and azimuthal angles for the Bloch vector representation. As such, the $|0\rangle$ and $|1\rangle$ vectors, parametrised by $(0, 0)$ and $(2\pi, 0)$ respectively, are parallel to one another on the sphere – as confusing as it may seem – since $|0\rangle$ points up (by convention) and $|1\rangle$ points down.
Next, it seems that you are rotating about the Z axis, instead of about the X or Y axis.
The exponentiated operator $e^{-i\alpha/2\,{\rm Z}}=:{\rm R}_{\rm Z}(\alpha)$, where $\alpha\in(-2\pi, 2\pi]$, is a rotation about the Z axis, and has the following matrix form:
$${\rm R}_{\rm Z}(\alpha)=
\begin{bmatrix}e^{-i\alpha/2}&0\\
0&e^{i\alpha/2}\end{bmatrix}.$$
You can check that this indeed corresponds to a Z rotation of a Bloch vector by the same angle.
Assuming you took $V(\beta,|\psi\rangle)={\rm R}_{\rm Z}(2\beta)|\psi\rangle$, apply this operator to the $|1\rangle$ state with $\beta=\frac\pi2$ and you get ${\rm R}_{\rm Z}(\pi)|1\rangle=e^{i\pi/2}|1\rangle=i|1\rangle.$
The X and Y rotation operators, on the other hand, look like this:
$${\rm R}_{\rm X}(\alpha)=e^{-i\alpha/2\,{\rm X}}=
\begin{bmatrix}\cos\alpha/2&-i\sin\alpha/2\\
-i\sin\alpha/2&\cos\alpha/2\end{bmatrix},$$
$${\rm R}_{\rm Y}(\alpha)=e^{-i\alpha/2\,{\rm Y}}=
\begin{bmatrix}\cos\alpha/2&-\sin\alpha/2\\
\sin\alpha/2&\cos\alpha/2\end{bmatrix}.$$
Following the same reasoning, let us apply ${\rm R}_{\rm X}(\pi)$ and ${\rm R}_{\rm Y}(\pi)$ to the $|1\rangle$ state:
$${\rm R}_{\rm X}(\pi)|1\rangle=-i\sin\pi/2\,|0\rangle+\cos\pi/2\,|1\rangle=-i|0\rangle,$$
$${\rm R}_{\rm Y}(\pi)|1\rangle=-\!\sin\pi/2\,|0\rangle+\cos\pi/2\,|1\rangle=-|0\rangle.$$
Long story short, it depends on the axis about which you rotate (as is always the case with rotations). In this case you were expecting a Y rotation, but you did a Z rotation.
For more information, I highly recommend you check out this excellent lecture by Ian Glendinning on Pauli rotations.