I was going through the seminal paper of Urmila Mahadev on Classical Verification of Quantum Computations(for an overview see this excellent talk by her). As a physicist by training, I am not very familiar with cryptographic strategies. Thus, I am not sure how exactly an adversary prover can get away with cheating if he can break the computational assumption of hardness of LWE (learning with errors) and thereby find a claw for the Trapdoor claw-free function pair.
Specifically, the protocols starts out with the quantum prover creating an arbitrary state that he expects to pass the Local Hamiltonian test (so ideally the ground state of the Hamiltonian). For this state, the prover just looks at a single qubit part of his state (I am also very confused as to how the entanglement between the different qubits don't play any role here) and the author assumes this to be some pure state $|\psi\rangle=\alpha_0|0\rangle+\alpha_1|1\rangle. $ To commit to this state, the prover entangles this state with the two pre-images $x_0,x_1$ of the trapdoor clawfree function pair $f_0,f_1$ using a quantum oracle and sends back the classical string $y=f(x_0)=f(x_1)$. At this point, the prover holds the state $|\psi_{ent}\rangle=\alpha_0|0\rangle|x_0\rangle+\alpha_1|1\rangle|x_1\rangle$ which is a state that he himself doesn't know the full description of because it is hard to know $x_0 \; \text{and}\; x_1$ (actually even one of bit of $x_1$) simultaneously. The rest of the paper uses this ignorance to tie the hands of the prover and states that if the prover applies some arbitrary unitary to his state $|\psi_{enc}\rangle$ this U is computationally randomized both by the state encoding and the decoding of the verifier.
But my question is a lot simpler (and naive). I don't understand how the prover can apply an arbitary unitary even if he knew the full description of the state $|\psi_{enc}\rangle$. If the ground state of the Hamiltonian is unique, how can the prover apply a known unitary to his state and still expect to pass the Local Hamiltonian test? I am sure I am missing something trivial.
Also, it would be nice if someone can explain why the entanglement between the different qubit of the ground state can be just ignored and why the mixed case treatment is identical to the analysis done assuming pure states for each qubit.
Thanks in advance.