The italicized section below is referring to chapter 3 of "Quantum Mechanics: The Theoretical Minimum" by Leonard Susskind and Art Friedman.
It is written that the operator that corresponds to measuring spin in the $\hat{n}$ direction is $\sigma_\hat{n} = n_x X + n_y Y + n_z Z$. The book gives an example where $\hat{n}$ lies in the z-x plane, $$\hat{n} = \begin{pmatrix}\sin(\theta) \\ 0\\ \cos(\theta)\end{pmatrix}$$ where $\theta$ is the angle between $\hat{n}$ and the $z$ axis. In matrix form, this gives: $$ \sigma_\hat{n}= \begin{pmatrix} \cos(\theta) & \sin(\theta) \\ \sin(\theta) & -\cos(\theta) \end{pmatrix} $$ with eigenvalues and eigenvectors $[1, \big(\begin{smallmatrix} \cos(\theta/2) \\ \sin(\theta/2) \end{smallmatrix}\big)]$ and $[-1, \big(\begin{smallmatrix} -\sin(\theta/2) \\ \cos(\theta/2) \end{smallmatrix}\big)]$.
So, if a state, $|\psi\rangle$, is pointing in the direction $\hat{n}$, it has an angle of $\theta$ from the Z axis, then it's state vector in the Z basis should be $|\psi\rangle = \big(\begin{smallmatrix} \cos(\theta) \\ \sin(\theta) \end{smallmatrix}\big) = \hat{n}$.
Why do the eigenvectors of $\sigma_n$ not align with the vector for $\hat{n}$? My thinking is that measuring the spin in the direction $\hat{n}$ should leave a state either in $\hat{n}$ or a state orthogonal to $\hat{n}$.
My guess is that I'm making a mental error going from the Cartesian system to Bloch Sphere system.